Preprints

4

Feasibility of an Evolutionary Tumor Board for Generating Novel Personalized Therapeutic Strategies

M. Robertson-Tessi, J. Brown, M. Poole, M. Johnson, A. Marusyk, J. Gallaher, K. Luddy, C. Whelan, J. West, M. Strobl, V. Turati, H. Enderling, M. Schell, A. Tan, T. Boyle, R. Makanji, J. Farinhas, H. Soliman, D. Lemanne, R. Gatenby, D. Reed, A. Anderson, C. Chung, 2023


Link to preprint

3

Local contact inhibition leads to universal principles of cell population growth

G. Kimmel, J. West, M. Damaghi, A. Anderson, P. Altrock, 2022


Link to preprint

2

Antifragile Therapy

J. West, B. Desai, M. Strobl, L. Pierik, R. Vander Velde, C. Armagost, R. Miles, M. Robertson-Tessi, A. Marusyk, A. Anderson, 2020


Link to preprint

1

Macrophage-mediated immunoediting drives ductal carcinoma evolution: Space is the game changer

C. Gatenbee, J. West, M. Robertson-Tessi, A. Baker, N. Guljar, T. Graham, A. Anderson, 2018


Link to preprint






Peer-reviewed publications


31

Antifragility in complex dynamical systems

C. Axenie, O. López-Corona, M. Makridis, M. Akbarzadeh, M. Saveriano, A. Stancu, J. West, 2024


Link to preprint Link to publication

30

Defining and Addressing Research Priorities in Cancer Cachexia through Transdisciplinary Collaboration

M. Park, C. Whelan, S. Ahmed, T. Boeringer, J. Brown, S. Crowder, C. Gregg, H. Jim, A. Judge, T. Mason, N. Parker, S. Pillai, S. Rajasekhara, G. Rasool, S. Tinsley, M. Schabath, P. Stewart, J. West, P. McDonald, J. Permuth, 2024


Link to publication

29

To modulate or to skip: De-escalating PARP inhibitor maintenance therapy in ovarian cancer using adaptive therapy

M. Strobl, A. Martin, J. West, J. Gallaher, M. Robertson-Tessi, R. Gatenby, R. Wenham, P. Maini, M. Damaghi, A. Anderson, 2024


Link to publication

27

Tumor-immune metaphenotypes orchestrate an evolutionary bottleneck that promotes metabolic transformation

J. West, F. Rentzeperis, C. Adam, R. Bravo, K. Luddy, M. Robertson-Tessi, A. Anderson, 2024


Link to preprint Link to publication

26

Treatment of evolving cancers will require dynamic decision support

M. Strobl, J. Gallaher, M. Robertson-Tessi, J. West, A. Anderson, 2023


Link to publication

24

A pilot study of donor-engrafted clonal hematopoiesis evolution and clinical outcomes in allogeneic hematopoietic cell transplant recipients using a national registry

N. Gillis, E. Padron, T. Wang, K. Chen, S. Spellman, S. Lee, C. Kitko, M. MacMillan, J. West, Y. Tang, M. Teng, S. McNulty, T. Druley, J. Pidala, A. Lazaryan, 2023


Link to publication

23

Inter- and intra-metastatic heterogeneity shapes adaptive therapy cycling dynamics

J. Gallaher, M. Strobl, J. West, J. Zhang, R. Gatenby, M. Robertson-Tessi, A. Anderson, 2023


Link to preprint Link to publication

22

A survey of open questions in adaptive therapy: bridging mathematics and clinical translation

J. West, F. Adler, J. Gallaher, M. Strobl, R. Brady-Nicholls, J. Brown, M. Robertson-Tessi, E. Kim, R. Noble, Y. Viossat, D. Basanta, A. Anderson, 2023


Link to preprint Link to publication

20

19

Homeostasis limits keratinocyte evolution

R. Schenck, E. Kim, R. Bravo, J. West, S. Leedham, D. Shibata, A. Anderson, 2022


Link to publication

18

Mistic: an open-source multiplexed image t-SNE viewer

S. Prabhakaran, C. Gatenbee, M. Robertson-Tessi, J. West, A. Beg, J. Gray, S. Antonia, R. Gatenby, A. Anderson, 2022


Link to preprint Link to publication

17

Spatial structure impacts adaptive therapy by shaping intra-tumoral competition

M. Strobl, J. Gallaher, J. West, M. Robertson-Tessi, P. Maini, A. Anderson, 2022


Link to publication

16

Immunosuppressive niche engineering at the onset of human colorectal cancer

C. Gatenbee, A. Baker, R. Schenck, M. Strobl, J. West, M. Neves, S. Hasan, E. Lakatos, P. Martinez, W. Cross, M. Jansen, M. Rodriguez-Justo, C. Whelan, A. Sottoriva, S. Leedham, M. Robertson-Tessi, T. Graham, A. Anderson, 2022


Link to publication

15

14

Normal tissue architecture determines the evolutionary course of cancer

J. West, R. Schenck, C. Gatenbee, M. Roberston-Tessi, A. Anderson, 2021


Link to publication

13

Turnover modulates the need for a cost of resistance in adaptive therapy

M. Strobl, J. West, Y. Viossat, M. Damaghi, M. Robertson-Tessi, J. Brown, R. Gatenby, P. Maini, A. Anderson, 2021


Link to publication

12

The harsh microenvironment in early breast cancer selects for a Warburg phenotype

M. Damaghi, J. West, M. Robertson-Tessi, Liping Xu, M. Ferrall-Fairbanks, P. Stewart, E. Persi, B. Fridley, P. Altrock, R. Gatenby, P. Sims, A. Anderson, R. Gillies, 2021


Link to preprint Link to publication

10

Towards multi-drug adaptive therapy

J. West, L. You, J. Zhang, R.A. Gatenby, J. Brown, P.K. Newton, A. Anderson, 2020


Link to publication

9

Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization

R. Bravo, E. Baratchart, J. West, R. Schenck, A. Miller, J. Gallaher, C. Gatenbee, D. Basanta, M. Robertson-Tessi, A. Anderson, 2020


Link to publication

7

The immune checkpoint kick start: Optimization of neoadjuvant combination therapy using game theory

J. West, M. Robertson-Tessi, K. Luddy, D. Park, D. Williamson, C. Harmon, H. Khong, J. Brown, A. Anderson, 2019


Link to preprint Link to publication

3

The prisoner's dilemma as a cancer model

J. West, Z. Hasnain, J. Mason, P. Newton, 2016


Link to publication

1

Experiments comparing precision of stereo-vision approaches for control of an industrial manipulator

J. Yoder, J. West, E. Baumgartner, M. Perrollaz, M. Seelinger, M. Robinson, 2013


Link to publication






Technical reports


6

Evolutionary exploitation of PD-L1 expression in hormone receptor positive breast cancer

J. West, D. Park, C. Harmon, D. Williamson, P. Ashcroft, D. Maestrini, A. Ardaseva, R. Bravo, P. Sahoo, H. Khong, K. Luddy, M. Robertson-Tessi, 2018

5

Optimizing chemo-scheduling based on tumor growth rates

J. West, P. Newton, 2018

4

Competitive release in tumors

Y. Ma, J. West, P. Newton, 2018

3

Targeting the Untargetable: Predicting Pramlintide Resistance Using a Neural Network Based Cellular Automata

E. Kim, R. Schenck, J. West, W. Cross, V. Harris, J. McKenna, H. Cho, E. Coker, S. Lee-Kramer, K. Tsai, E. Flores, C. Gatenbee, 2017

2

A Fuzzy Logic approach to collision avoidance in smart UAVs

Y. Ma, J. West, P. Newton, 2012

1

Urban Food Production season extension techniques

J. West, P. Ling, P. Grewal, 2010