Preprints
4
Feasibility of an Evolutionary Tumor Board for Generating Novel Personalized Therapeutic Strategies
M. Robertson-Tessi, J. Brown, M. Poole, M. Johnson, A. Marusyk, J. Gallaher, K. Luddy, C. Whelan, J. West, M. Strobl, V. Turati, H. Enderling, M. Schell, A. Tan, T. Boyle, R. Makanji, J. Farinhas, H. Soliman, D. Lemanne, R. Gatenby, D. Reed, A. Anderson, C. Chung, 2023
Link to preprint3
Local contact inhibition leads to universal principles of cell population growth
G. Kimmel, J. West, M. Damaghi, A. Anderson, P. Altrock, 2022
Link to preprint2
Antifragile Therapy
J. West, B. Desai, M. Strobl, L. Pierik, R. Vander Velde, C. Armagost, R. Miles, M. Robertson-Tessi, A. Marusyk, A. Anderson, 2020
Link to preprint1
Macrophage-mediated immunoediting drives ductal carcinoma evolution: Space is the game changer
C. Gatenbee, J. West, M. Robertson-Tessi, A. Baker, N. Guljar, T. Graham, A. Anderson, 2018
Link to preprintPeer-reviewed publications
31
Antifragility in complex dynamical systems
C. Axenie, O. López-Corona, M. Makridis, M. Akbarzadeh, M. Saveriano, A. Stancu, J. West, 2024
Link to preprint Link to publication30
Defining and Addressing Research Priorities in Cancer Cachexia through Transdisciplinary Collaboration
M. Park, C. Whelan, S. Ahmed, T. Boeringer, J. Brown, S. Crowder, C. Gregg, H. Jim, A. Judge, T. Mason, N. Parker, S. Pillai, S. Rajasekhara, G. Rasool, S. Tinsley, M. Schabath, P. Stewart, J. West, P. McDonald, J. Permuth, 2024
Link to publication29
To modulate or to skip: De-escalating PARP inhibitor maintenance therapy in ovarian cancer using adaptive therapy
M. Strobl, A. Martin, J. West, J. Gallaher, M. Robertson-Tessi, R. Gatenby, R. Wenham, P. Maini, M. Damaghi, A. Anderson, 2024
Link to publication28
Second-order effects of chemotherapy pharmacodynamics and pharmacokinetics on tumor regression and cachexia
L. Pierik, P. McDonald, A. Anderson, J. West, 2024
Link to preprint Link to publication27
Tumor-immune metaphenotypes orchestrate an evolutionary bottleneck that promotes metabolic transformation
J. West, F. Rentzeperis, C. Adam, R. Bravo, K. Luddy, M. Robertson-Tessi, A. Anderson, 2024
Link to preprint Link to publication26
Treatment of evolving cancers will require dynamic decision support
M. Strobl, J. Gallaher, M. Robertson-Tessi, J. West, A. Anderson, 2023
Link to publication25
Games and the treatment convexity of cancer
P. Bayer, J. West, 2023
Link to preprint Link to publication24
A pilot study of donor-engrafted clonal hematopoiesis evolution and clinical outcomes in allogeneic hematopoietic cell transplant recipients using a national registry
N. Gillis, E. Padron, T. Wang, K. Chen, S. Spellman, S. Lee, C. Kitko, M. MacMillan, J. West, Y. Tang, M. Teng, S. McNulty, T. Druley, J. Pidala, A. Lazaryan, 2023
Link to publication23
Inter- and intra-metastatic heterogeneity shapes adaptive therapy cycling dynamics
J. Gallaher, M. Strobl, J. West, J. Zhang, R. Gatenby, M. Robertson-Tessi, A. Anderson, 2023
Link to preprint Link to publication22
A survey of open questions in adaptive therapy: bridging mathematics and clinical translation
J. West, F. Adler, J. Gallaher, M. Strobl, R. Brady-Nicholls, J. Brown, M. Robertson-Tessi, E. Kim, R. Noble, Y. Viossat, D. Basanta, A. Anderson, 2023
Link to preprint Link to publication21
Working With Convex Responses: Antifragility From Finance to Oncology
N. Taleb, J. West, 2023
Link to preprint Link to publication20
Agent-based methods facilitate integrative science in cancer
J. West, M. Robertson-Tessi, A. Anderson, 2022
Link to publication19
Homeostasis limits keratinocyte evolution
R. Schenck, E. Kim, R. Bravo, J. West, S. Leedham, D. Shibata, A. Anderson, 2022
Link to publication18
Mistic: an open-source multiplexed image t-SNE viewer
S. Prabhakaran, C. Gatenbee, M. Robertson-Tessi, J. West, A. Beg, J. Gray, S. Antonia, R. Gatenby, A. Anderson, 2022
Link to preprint Link to publication17
Spatial structure impacts adaptive therapy by shaping intra-tumoral competition
M. Strobl, J. Gallaher, J. West, M. Robertson-Tessi, P. Maini, A. Anderson, 2022
Link to publication16
Immunosuppressive niche engineering at the onset of human colorectal cancer
C. Gatenbee, A. Baker, R. Schenck, M. Strobl, J. West, M. Neves, S. Hasan, E. Lakatos, P. Martinez, W. Cross, M. Jansen, M. Rodriguez-Justo, C. Whelan, A. Sottoriva, S. Leedham, M. Robertson-Tessi, T. Graham, A. Anderson, 2022
Link to publication15
Gattaca: Base pair resolution mutation tracking for somatic evolution studies using agent-based models
R. Schenck, G. Brosula, J. West, S. Leedham, D. Shibata, A. Anderson, 2022
Link to publication14
Normal tissue architecture determines the evolutionary course of cancer
J. West, R. Schenck, C. Gatenbee, M. Roberston-Tessi, A. Anderson, 2021
Link to publication13
Turnover modulates the need for a cost of resistance in adaptive therapy
M. Strobl, J. West, Y. Viossat, M. Damaghi, M. Robertson-Tessi, J. Brown, R. Gatenby, P. Maini, A. Anderson, 2021
Link to publication12
The harsh microenvironment in early breast cancer selects for a Warburg phenotype
M. Damaghi, J. West, M. Robertson-Tessi, Liping Xu, M. Ferrall-Fairbanks, P. Stewart, E. Persi, B. Fridley, P. Altrock, R. Gatenby, P. Sims, A. Anderson, R. Gillies, 2021
Link to preprint Link to publication11
IsoMaTrix: a framework to visualize the isoclines of matrix games and quantify uncertainty in structured populations
J. West, Yongqian Ma, Artem Kaznatcheev, A. Anderson, 2020
Link to publication10
Towards multi-drug adaptive therapy
J. West, L. You, J. Zhang, R.A. Gatenby, J. Brown, P.K. Newton, A. Anderson, 2020
Link to publication9
Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization
R. Bravo, E. Baratchart, J. West, R. Schenck, A. Miller, J. Gallaher, C. Gatenbee, D. Basanta, M. Robertson-Tessi, A. Anderson, 2020
Link to publication8
Multidrug cancer therapy in metastatic castrate-resistant prostate cancer: An evolution-based strategy
J. West, M. Dinh, J. Brown, J. Zhang, A. Anderson, R. Gatenby, 2019
Link to publication7
The immune checkpoint kick start: Optimization of neoadjuvant combination therapy using game theory
J. West, M. Robertson-Tessi, K. Luddy, D. Park, D. Williamson, C. Harmon, H. Khong, J. Brown, A. Anderson, 2019
Link to preprint Link to publication3
The prisoner's dilemma as a cancer model
J. West, Z. Hasnain, J. Mason, P. Newton, 2016
Link to publication2
An evolutionary model of tumor cell kinetics and the emergence of molecular heterogeneity driving Gompertzian growth
J. West, Z. Hasnain, P. Newton, 2016
Link to publication1
Experiments comparing precision of stereo-vision approaches for control of an industrial manipulator
J. Yoder, J. West, E. Baumgartner, M. Perrollaz, M. Seelinger, M. Robinson, 2013
Link to publicationTechnical reports
6
Evolutionary exploitation of PD-L1 expression in hormone receptor positive breast cancer
J. West, D. Park, C. Harmon, D. Williamson, P. Ashcroft, D. Maestrini, A. Ardaseva, R. Bravo, P. Sahoo, H. Khong, K. Luddy, M. Robertson-Tessi, 2018
5
Optimizing chemo-scheduling based on tumor growth rates
J. West, P. Newton, 2018
4
Competitive release in tumors
Y. Ma, J. West, P. Newton, 2018
3
Targeting the Untargetable: Predicting Pramlintide Resistance Using a Neural Network Based Cellular Automata
E. Kim, R. Schenck, J. West, W. Cross, V. Harris, J. McKenna, H. Cho, E. Coker, S. Lee-Kramer, K. Tsai, E. Flores, C. Gatenbee, 2017
2
A Fuzzy Logic approach to collision avoidance in smart UAVs
Y. Ma, J. West, P. Newton, 2012
1
Urban Food Production season extension techniques
J. West, P. Ling, P. Grewal, 2010